Bond valenceversusO...O distance in hydrogen bonds

Hydrogen Bonds

Short hydrogen bonds in proteins.

Short hydrogen bonds are present in many chemical and biological systems. It is well known that these short hydrogen bonds are found in the active site of enzymes and aid enzyme catalysis. This study aims to systematically characterize all short hydrogen bonds from a nonredundant dataset of protein structures. The study has revealed that short hydrogen bonds are commonly found in proteins and a...

Correlated Tunneling in Hydrogen Bonds

We study the quantum nature of the protons participating in hydrogen bonds in several ice structures by analyzing the one particle density matrix. We find that in all cases, including ice Ih, the most common form of ice, and the high pressure phases, ice VIII, VII, and X, the system is ground-state dominated. However, while the dynamics is uncorrelated in the structures with standard asymmetric...

Hydrogen bonds in polymer folding.

We studied the thermodynamics of a homopolymeric chain with both van der Waals and directed hydrogen bond interaction. The effect of hydrogen bonds is to reduce dramatically the entropy of low-lying states and to give rise to long-range order and to conformations displaying secondary structures. For compact polymers a transition is found between helix-rich states and low-entropy sheet-dominated...

Hydrogen bond strength modulates the mechanical strength of ferric-thiolate bonds in rubredoxin.

It has long been recognized that hydrogen bonds formed by protein backbone amides with cysteinyl S(γ) atoms play important roles in modulating the functional and structural properties of the iron-sulfur centers in proteins. Here we use single molecule atomic force microscopy, cyclic voltammetry, and protein engineering techniques to investigate directly how the strength of N-H···S(γ) hydrogen b...